Publications
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- Carbon Capture
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- Genetic Code Expansion
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- Therapeutics & Resistance
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- Genome Editing
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- Directed Evolution
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- Protein Engineering
Badran Lab Publications and Preprints
(Badran lab members are underlined; *co-first authors; ‡corresponding author)
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- Carbon Capture
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- Genome Editing
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- Directed Evolution
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- Protein Engineering
A Genetically Encoded System to Quantify and Evolve RuBisCO-Catalyzed Carbon Fixation.
Lanster DL, Li Z, Badran AH‡.
Under Revision. bioRxiv preprint
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- Genetic Code Expansion
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- Genome Editing
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- Directed Evolution
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- Protein Engineering
Genetic Code Expansion History and Modern Innovations.
Costello AM, Peterson AA, Chen P-H, Bagirzadeh R, Lanster DL, Badran AH‡.
Chemical Reviews (2024), DOI: 10.1021/acs.chemrev.4c00275. PDF
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- Genetic Code Expansion
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- Therapeutics & Resistance
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- Directed Evolution
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- Protein Engineering
Natural and Engineered Precision Antibiotics in the Context of Resistance.
Johnston CW‡, Badran AH‡.
Current Opinion in Chemical Biology (2022), 69: 102160. PDF
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- Genetic Code Expansion
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- Directed Evolution
Multiplex Suppression of Four Quadruplet Codons via tRNA Directed Evolution.
DeBenedictis E*, Carver GD*, Chung C, Söll D, Badran AH‡.
Nature Communications (2021), 12: 5706. PDF / SI
- Highlighted at The Scripps Research Institute, Phys Org, and DDN Magazine
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- Genetic Code Expansion
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- Protein Engineering
Orthogonal Translation Enables Heterologous Ribosome Engineering in E. coli.
Kolber N, Fattal R, Bratulic S, Carver GD, Badran AH‡.
Nature Communications (2021), 12: 599. PDF / SI
- Highlighted at the Broad Institute, Phys Org, and Chemical and Engineering News
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- Genetic Code Expansion
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- Genome Editing
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- Directed Evolution
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- Protein Engineering
Synthetic Biological Circuits within an Orthogonal Central Dogma
Costello AM, Badran AH‡.
Trends in Biotechnology (2020), 39(1): 59-71. PDF
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- Therapeutics & Resistance
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- Genome Editing
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- Directed Evolution
A Deep Learning Approach to Antibiotic Discovery
Stokes JM, Yang K, Swanson K, Jin W, Cubillos-Ruiz A, Donghia NM, MacNair CR, French S, Carfrae LA, Bloom-Ackermann Z, Tran VM, Chiappino-Pepe A, Badran AH, Andrews IW, Chory EJ, Church GM, Brown ED, Jaakkola TS, Barzilay R, Collins JJ.
Cell (2020), 180(4): 688–702. PDF
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- Therapeutics & Resistance
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- Genome Editing
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- Directed Evolution
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- Protein Engineering
Editing the Genome Without Double-Stranded DNA Breaks
Komor AC‡, Badran AH‡, Liu DR‡.
ACS Chemical Biology (2018), 13(2): 383–388. PDF
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- Genome Editing
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- Directed Evolution
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- Protein Engineering
Modern Methods for Laboratory Diversification of Biomolecules
Bratulic S, Badran AH‡.
Current Opinion in Chemical Biology (2017), 41: 50–60. PDF
Badran’s Publications as a Graduate Student:
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- Therapeutics & Resistance
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- Directed Evolution
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- Protein Engineering
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- Therapeutics & Resistance
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- Genome Editing
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- Directed Evolution
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- Protein Engineering
CRISPR-Based Technologies for the Manipulation of Eukaryotic Genomes
Komor AC, Badran AH, Liu DR.
Cell (2017), 168(1-2): 20–36. PDF
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- Genome Editing
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- Directed Evolution
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- Protein Engineering
In Vivo Continuous Directed Evolution
Badran AH, Liu DR.
Current Opinion in Chemical Biology (2014), 24: 1–10. PDF
Badran’s Publications an Undergraduate Researcher:
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- Protein Engineering
Direct DNA Methylation Profiling Using Methyl Binding Domain Proteins.
Yu Y, Blair S, Gillespie D, Jensen R, Myszka D, Badran AH, Ghosh I, Chagovetz A.
Analytical Chemistry (2010), 82(12): 5012–5019. PDF